BAP85604.1 protein (Lactobacillus hokkaidonensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BAP85604.1

Transposase; DNA-binding interface [nucleotide binding]; Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed..; cd00569; Integrase core domain; pfam00665; Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]; COG2826; gene_1024; identified by MetaGeneAnnotator; putative; transposase [Lactobacillus fermentum CECT 5716]. (341 aa)

Predicted Functional Partners:

BAP84802.1

0.635

BAP85603.1

0.478

BAP84695.1

0.427

BAP86152.1

0.427

BAP86310.1

0.427

BAP84801.1

0.405

Your Current Organism:

Lactobacillus hokkaidonensis

NCBI taxonomy Id: 1291742
Other names: L. hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis LOOC260, Lactobacillus sp. LOOC260

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAP84695.1	BAP85604.1	LOOC260_101160	LOOC260_110650	Transposase DDE domain; pfam01609; gene_115; identified by MetaGeneAnnotator; putative; strain coidentity: ATCC 53103 = GG; synonym: Lactobacillus rhamnosus ATCC 53103; transposase [Lactobacillus rhamnosus GG].	Transposase; DNA-binding interface [nucleotide binding]; Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed..; cd00569; Integrase core domain; pfam00665; Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]; COG2826; gene_1024; identified by MetaGeneAnnotator; putative; transposase [Lactobacillus fermentum CECT 5716].	0.427
BAP84801.1	BAP84802.1	LOOC260_102230	LOOC260_102240	Transposase; HTH-like domain; pfam13276; Integrase core domain; pfam00665; Integrase core domain; pfam13683; Transposase and inactivated derivatives [DNA replication, recombination, and repair]; COG2801; gene_221; identified by MetaGeneAnnotator; putative; transposase [Lactobacillus casei ATCC 334].	Transposase; AA sequence:Uniprot:Q8GP64_STRTR; DNA-binding interface [nucleotide binding]; Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Transposase; pfam01527; gene_222; identified by MetaGeneAnnotator; putative; transposase [Lactobacillus casei BL23].	0.936
BAP84801.1	BAP85604.1	LOOC260_102230	LOOC260_110650	Transposase; HTH-like domain; pfam13276; Integrase core domain; pfam00665; Integrase core domain; pfam13683; Transposase and inactivated derivatives [DNA replication, recombination, and repair]; COG2801; gene_221; identified by MetaGeneAnnotator; putative; transposase [Lactobacillus casei ATCC 334].	Transposase; DNA-binding interface [nucleotide binding]; Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed..; cd00569; Integrase core domain; pfam00665; Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]; COG2826; gene_1024; identified by MetaGeneAnnotator; putative; transposase [Lactobacillus fermentum CECT 5716].	0.405
BAP84802.1	BAP84801.1	LOOC260_102240	LOOC260_102230	Transposase; AA sequence:Uniprot:Q8GP64_STRTR; DNA-binding interface [nucleotide binding]; Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Transposase; pfam01527; gene_222; identified by MetaGeneAnnotator; putative; transposase [Lactobacillus casei BL23].	Transposase; HTH-like domain; pfam13276; Integrase core domain; pfam00665; Integrase core domain; pfam13683; Transposase and inactivated derivatives [DNA replication, recombination, and repair]; COG2801; gene_221; identified by MetaGeneAnnotator; putative; transposase [Lactobacillus casei ATCC 334].	0.936
BAP84802.1	BAP85604.1	LOOC260_102240	LOOC260_110650	Transposase; AA sequence:Uniprot:Q8GP64_STRTR; DNA-binding interface [nucleotide binding]; Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Transposase; pfam01527; gene_222; identified by MetaGeneAnnotator; putative; transposase [Lactobacillus casei BL23].	Transposase; DNA-binding interface [nucleotide binding]; Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed..; cd00569; Integrase core domain; pfam00665; Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]; COG2826; gene_1024; identified by MetaGeneAnnotator; putative; transposase [Lactobacillus fermentum CECT 5716].	0.635
BAP85603.1	BAP85604.1	LOOC260_110640	LOOC260_110650	23S rRNA methyltransferase; COG: COG0144; S-adenosylmethionine binding site [chemical binding]; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); cd02440; gene_1023; identified by MetaGeneAnnotator; putative; pre-rRNA processing and ribosome biogenesis; pfam13636; rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed; PRK11933; tRNA/rRNA methyltransferase [Lactobacillus vaginalis ATCC 49540].	Transposase; DNA-binding interface [nucleotide binding]; Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed..; cd00569; Integrase core domain; pfam00665; Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]; COG2826; gene_1024; identified by MetaGeneAnnotator; putative; transposase [Lactobacillus fermentum CECT 5716].	0.478
BAP85604.1	BAP84695.1	LOOC260_110650	LOOC260_101160	Transposase; DNA-binding interface [nucleotide binding]; Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed..; cd00569; Integrase core domain; pfam00665; Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]; COG2826; gene_1024; identified by MetaGeneAnnotator; putative; transposase [Lactobacillus fermentum CECT 5716].	Transposase DDE domain; pfam01609; gene_115; identified by MetaGeneAnnotator; putative; strain coidentity: ATCC 53103 = GG; synonym: Lactobacillus rhamnosus ATCC 53103; transposase [Lactobacillus rhamnosus GG].	0.427
BAP85604.1	BAP84801.1	LOOC260_110650	LOOC260_102230	Transposase; DNA-binding interface [nucleotide binding]; Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed..; cd00569; Integrase core domain; pfam00665; Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]; COG2826; gene_1024; identified by MetaGeneAnnotator; putative; transposase [Lactobacillus fermentum CECT 5716].	Transposase; HTH-like domain; pfam13276; Integrase core domain; pfam00665; Integrase core domain; pfam13683; Transposase and inactivated derivatives [DNA replication, recombination, and repair]; COG2801; gene_221; identified by MetaGeneAnnotator; putative; transposase [Lactobacillus casei ATCC 334].	0.405
BAP85604.1	BAP84802.1	LOOC260_110650	LOOC260_102240	Transposase; DNA-binding interface [nucleotide binding]; Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed..; cd00569; Integrase core domain; pfam00665; Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]; COG2826; gene_1024; identified by MetaGeneAnnotator; putative; transposase [Lactobacillus fermentum CECT 5716].	Transposase; AA sequence:Uniprot:Q8GP64_STRTR; DNA-binding interface [nucleotide binding]; Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Transposase; pfam01527; gene_222; identified by MetaGeneAnnotator; putative; transposase [Lactobacillus casei BL23].	0.635
BAP85604.1	BAP85603.1	LOOC260_110650	LOOC260_110640	Transposase; DNA-binding interface [nucleotide binding]; Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed..; cd00569; Integrase core domain; pfam00665; Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]; COG2826; gene_1024; identified by MetaGeneAnnotator; putative; transposase [Lactobacillus fermentum CECT 5716].	23S rRNA methyltransferase; COG: COG0144; S-adenosylmethionine binding site [chemical binding]; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); cd02440; gene_1023; identified by MetaGeneAnnotator; putative; pre-rRNA processing and ribosome biogenesis; pfam13636; rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed; PRK11933; tRNA/rRNA methyltransferase [Lactobacillus vaginalis ATCC 49540].	0.478
BAP85604.1	BAP86152.1	LOOC260_110650	LOOC260_116450	Transposase; DNA-binding interface [nucleotide binding]; Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed..; cd00569; Integrase core domain; pfam00665; Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]; COG2826; gene_1024; identified by MetaGeneAnnotator; putative; transposase [Lactobacillus fermentum CECT 5716].	Transposase DDE domain; pfam01609; gene_1572; identified by MetaGeneAnnotator; putative; strain coidentity: ATCC 53103 = GG; synonym: Lactobacillus rhamnosus ATCC 53103; transposase [Lactobacillus rhamnosus GG].	0.427
BAP85604.1	BAP86310.1	LOOC260_110650	LOOC260_118040	Transposase; DNA-binding interface [nucleotide binding]; Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed..; cd00569; Integrase core domain; pfam00665; Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]; COG2826; gene_1024; identified by MetaGeneAnnotator; putative; transposase [Lactobacillus fermentum CECT 5716].	Transposase DDE domain; pfam01609; gene_1730; identified by MetaGeneAnnotator; putative; strain coidentity: ATCC 53103 = GG; synonym: Lactobacillus rhamnosus ATCC 53103; transposase [Lactobacillus rhamnosus GG].	0.427
BAP86152.1	BAP85604.1	LOOC260_116450	LOOC260_110650	Transposase DDE domain; pfam01609; gene_1572; identified by MetaGeneAnnotator; putative; strain coidentity: ATCC 53103 = GG; synonym: Lactobacillus rhamnosus ATCC 53103; transposase [Lactobacillus rhamnosus GG].	Transposase; DNA-binding interface [nucleotide binding]; Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed..; cd00569; Integrase core domain; pfam00665; Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]; COG2826; gene_1024; identified by MetaGeneAnnotator; putative; transposase [Lactobacillus fermentum CECT 5716].	0.427
BAP86310.1	BAP85604.1	LOOC260_118040	LOOC260_110650	Transposase DDE domain; pfam01609; gene_1730; identified by MetaGeneAnnotator; putative; strain coidentity: ATCC 53103 = GG; synonym: Lactobacillus rhamnosus ATCC 53103; transposase [Lactobacillus rhamnosus GG].	Transposase; DNA-binding interface [nucleotide binding]; Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed..; cd00569; Integrase core domain; pfam00665; Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]; COG2826; gene_1024; identified by MetaGeneAnnotator; putative; transposase [Lactobacillus fermentum CECT 5716].	0.427

Server load: low (30%) [HD]

Permalink

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2023

Credits

Access

Info

About